TY - JOUR
T1 - A Community Effort to Develop Common Data Elements for Pre-Clinical Spinal Cord Injury Research
AU - The Preclinical SCI Common Data Elements (CDE) Workshop Participants
AU - Fedor, Britt A.
AU - Torres-Espin, Abel
AU - Vavrek, Romana
AU - Martone, Maryann E.
AU - Bixby, John L.
AU - Gensel, John C.
AU - Lemmon, Vance
AU - Grethe, Jeffrey S.
AU - Huie, J. Russel
AU - Ferguson, Adam R.
AU - Fouad, Karim
AU - Ferguson, Adam
AU - Doperalski, Adele
AU - Keller, Anastasia
AU - Bandrowski, Anita
AU - Sheoran, Anushka
AU - Fedor, Britt
AU - Fields, Daryl
AU - Balser, David
AU - Hemmerle, Deb
AU - Tsai, Eve
AU - Franca, Fernanda Stapenhorst
AU - Hsu, George
AU - Bresnahan, Jacqueline
AU - Zhu, Jiepei
AU - Bixby, John
AU - Gensel, John
AU - Kibayashi, Kazuhiko
AU - Wang, Kevin
AU - Byrnes, Kimberly
AU - Iyer, Krithika
AU - Maliga-Davis, Lex
AU - Deng, Lingxiao
AU - Jakeman, Lyn
AU - Sorani, Marco
AU - Bagonis, Maria
AU - Martone, Maryann
AU - Beattie, Michael
AU - Lane, Michael
AU - LaPlaca, Michelle
AU - Harris, Neil Le Belle
AU - Kyritsis, Nikos
AU - Sulimai, Nurul
AU - Fairbairn, P. J.
AU - Chandran, Preeja
AU - Saigal, Rajiv
AU - Dange, Riya
AU - Lecerf, Romana Vavrek
AU - Huie, Russell
AU - Huang, Ruyi
N1 - Publisher Copyright:
© The Author(s) 2025.
PY - 2025/4/1
Y1 - 2025/4/1
N2 - For nearly 350 years, the process of disseminating scientific knowledge has remained largely unchanged. Scientists conduct experiments, analyze the data, and publish their findings in the form of scientific articles. Since the turn of the century, this process has been challenged by numerous open science and data sharing efforts to enhance transparency, reproducibility, and replicability of scientific research. Big data approaches, together with machine learning and artificial intelligence, are frequently used to gain insight into the ever-growing complexity of biological systems and biomedical research. To utilize these approaches and harness the continuously increasing computational power requires data to be both machine readable and, ideally, harmonized across studies. Therein lies the challenge: understanding how to organize and describe data is a critical skill for scientists, yet one that is rarely explicitly taught. Common data elements (CDEs), standardized definitions, and reporting structures for data represent a practical solution to this challenge. With the goal of creating a common language to describe and share pre-clinical spinal cord injury (SCI) research data, the open data commons for SCI, in collaboration with the National Institute of Neurological Disorders and Stroke, kicked off this process with the “Preclinical SCI Common Data Elements (CDE) Workshop,” held in conjunction with the National Neurotrauma Symposium in San Francisco, California in June 2024. In this report, we discuss the workshop proceedings, summarize the input provided by the SCI research community, share insights from related CDE efforts, and provide a pragmatic approach to creating CDEs for pre-clinical SCI research.
AB - For nearly 350 years, the process of disseminating scientific knowledge has remained largely unchanged. Scientists conduct experiments, analyze the data, and publish their findings in the form of scientific articles. Since the turn of the century, this process has been challenged by numerous open science and data sharing efforts to enhance transparency, reproducibility, and replicability of scientific research. Big data approaches, together with machine learning and artificial intelligence, are frequently used to gain insight into the ever-growing complexity of biological systems and biomedical research. To utilize these approaches and harness the continuously increasing computational power requires data to be both machine readable and, ideally, harmonized across studies. Therein lies the challenge: understanding how to organize and describe data is a critical skill for scientists, yet one that is rarely explicitly taught. Common data elements (CDEs), standardized definitions, and reporting structures for data represent a practical solution to this challenge. With the goal of creating a common language to describe and share pre-clinical spinal cord injury (SCI) research data, the open data commons for SCI, in collaboration with the National Institute of Neurological Disorders and Stroke, kicked off this process with the “Preclinical SCI Common Data Elements (CDE) Workshop,” held in conjunction with the National Neurotrauma Symposium in San Francisco, California in June 2024. In this report, we discuss the workshop proceedings, summarize the input provided by the SCI research community, share insights from related CDE efforts, and provide a pragmatic approach to creating CDEs for pre-clinical SCI research.
KW - ODC-SCI
KW - common data elements
KW - data management
KW - data sharing
KW - neurotrauma
KW - spinal cord injury
UR - http://www.scopus.com/inward/record.url?scp=105004229239&partnerID=8YFLogxK
U2 - 10.1089/neur.2025.0021
DO - 10.1089/neur.2025.0021
M3 - Review article
AN - SCOPUS:105004229239
SN - 2689-288X
VL - 6
SP - 391
EP - 401
JO - Neurotrauma Reports
JF - Neurotrauma Reports
IS - 1
ER -