Free software tools for atlas-based volumetric neuroimage analysis

Pierre Louis Bazin; Dzung L. Pham; William Gandler; Matthew McAuliffe

doi:10.1117/12.595602

Free software tools for atlas-based volumetric neuroimage analysis

Pierre Louis Bazin^*, Dzung L. Pham, William Gandler, Matthew McAuliffe

^*Corresponding author for this work

Radiology and Bioengineering

Research output: Contribution to journal › Conference article › peer-review

11 Scopus citations

Abstract

We describe new and freely available software tools for measuring volumes in subrogions of the brain. The method is fast, flexible, and employs well-studied techniques based on the Talairach-Tournoux atlas. The software tools are released as plug-ins for MIPAV, a freely available and user-friendly image analysis software package developed by the National Institutes of Health. Our software tools include a digital Talairach atlas that consists of labels for 148 different substructures of the brain at various scales.

Original language	English
Article number	212
Pages (from-to)	1824-1833
Number of pages	10
Journal	Progress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume	5747
Issue number	III
DOIs	https://doi.org/10.1117/12.595602
State	Published - 2005
Event	Medical Imaging 2005 - Image Processing - San Diego, CA, United States Duration: 13 Feb 2005 → 17 Feb 2005

Keywords

AC-PC alignment
Segmentation
Talairach alignment
Talairach atlas
Volumetric image analysis

Access to Document

10.1117/12.595602

Cite this

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title = "Free software tools for atlas-based volumetric neuroimage analysis",

abstract = "We describe new and freely available software tools for measuring volumes in subrogions of the brain. The method is fast, flexible, and employs well-studied techniques based on the Talairach-Tournoux atlas. The software tools are released as plug-ins for MIPAV, a freely available and user-friendly image analysis software package developed by the National Institutes of Health. Our software tools include a digital Talairach atlas that consists of labels for 148 different substructures of the brain at various scales.",

keywords = "AC-PC alignment, Segmentation, Talairach alignment, Talairach atlas, Volumetric image analysis",

author = "Bazin, {Pierre Louis} and Pham, {Dzung L.} and William Gandler and Matthew McAuliffe",

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AU - Pham, Dzung L.

AU - Gandler, William

AU - McAuliffe, Matthew

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KW - AC-PC alignment

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KW - Talairach alignment

KW - Talairach atlas

KW - Volumetric image analysis

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