XGDB: Open-source computational infrastructure for the integrated evaluation and analysis of genome features

Shannon D. Schlueter, Matthew D. Wilkerson, Qunfeng Dong, Volker Brendel*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

15 Scopus citations

Abstract

The eXtensible Genome Data Broker (xGDB) provides a software infrastructure consisting of integrated tools for the storage, display, and analysis of genome features in their genomic context. Common features include gene structure annotations, spliced alignments, mapping of repetitive sequence, and microarray probes, but the software supports inclusion of any property that can be associated with a genomic location. The xGDB distribution and user support utilities are available online at the xGDB project website, http://xgdb.sourceforge.net/.

Original languageEnglish
Article numberR111
JournalGenome Biology
Volume7
Issue number11
DOIs
StatePublished - 20 Nov 2006
Externally publishedYes

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